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Proceedings of the 12th Python in Science Conference (SciPy 2013)

Stéfan van der Walt, Jarrod Millman, Katy Huff

June 24 - June 29

Austin, Texas

Organizers | Sponsored Students


Preface 1
Andy Terrel, Jonathan Rocher

DMTCP: Bringing Checkpoint-Restart to Python 2
Kapil Arya, Gene Cooperman

Multidimensional Data Exploration with Glue 8
Christopher Beaumont, Thomas Robitaille, Alyssa Goodman, Michelle Borkin

Hyperopt: A Python Library for Optimizing the Hyperparameters of Machine Learning Algorithms 13
James Bergstra, Dan Yamins, David D. Cox

SkData: Data Sets and Algorithm Evaluation Protocols in Python 21
James Bergstra, Nicolas Pinto, David D. Cox

Using Python to Study Rotational Velocity Distributions of Hot Stars 28
Gustavo Bragança, Simone Daflon, Katia Cunha, Thomas Bensby, Sally Oey, Gregory Walth

Automating Quantitative Confocal Microscopy Analysis 33
Mark E. Fenner, Barbara M. Fenner

Detection and characterization of interactions of genetic risk factors in disease 40
Patricia Francis-Lyon, Shashank Belvadi, Fu-Yuan Cheng

Pythran: Enabling Static Optimization of Scientific Python Programs 46
Serge Guelton, Pierrick Brunet, Alan Raynaud, Adrien Merlini, Mehdi Amini

Adapted G-mode Clustering Method applied to Asteroid Taxonomy 53
Pedro Henrique Hasselmann, Jorge Márcio Carvano, Daniela Lazzaro

Ginga: an open-source astronomical image viewer and toolkit 61
Eric Jeschke

Exploring Collaborative HPC Visualization Workflows using VisIt and Python 69
Hari Krishnan, Cyrus Harrison, Brad Whitlock, David Pugmire, Hank Childs

SunPy: Python for Solar Physicists 74
Stuart Mumford, David Pérez-Suárez, Steven Christe, Florian Mayer, Russell J. Hewett

Reproducible Documents with PythonTeX 78
Geoffrey M. Poore

lpEdit: an editor to facilitate reproducible analysis via literate programming 85
Adam J Richards, Andrzej S. Kosinski, Camille Bonneaud, Delphine Legrand, Kouros Owzar

GraphTerm: A notebook-like graphical terminal interface for collaboration and inline data visualization 90
Ramalingam Saravanan

Modeling the Earth with Fatiando a Terra 96
Leonardo Uieda, Vanderlei C. Oliveira Jr, Valéria C. F. Barbosa