Mini Symposia June 26th & June 27th

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Mini-Symposia, Day 1 - Wed., June 26th

Note: start times are not always con-current across tracks.

Bioinformatics
Rm 204
Astronomy and Astrophysics
Rm 203
GIS - Geospatial Data Analysis
Rm 102
05:00 PM - 05:13 PM
Bioinformatics - Next Gen Sequencing
Exploring disease genetics from thousands of individual genomes with Gemini
Quinlan, Aaron, University of Virginia; Paila, Uma, University of Virginia; Chapman, Brad, Harvard School of Public Health; Kirchner, Rory,
05:13 PM - 05:26 PM
Bioinformatics - Next Gen Sequencing
metaseq: a Python framework for integrating high-throughput sequencing analyses
Dale, Ryan, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of
05:26 PM - 05:39 PM
Bioinformatics - Next Gen Sequencing
Stuff to do with your genomic intervals
Pedersen, Brent; University of Colorado
05:39 PM - 05:45 PM
Bioinformatics - Next Gen Sequencing
Best-practice variant calling pipeline...
05:45 PM - 06:00 PM
Bioinformatics - Next Gen Sequencing
Discussion
06:00 PM - 06:15 PM
Bioinformatics - Machine Learning
All-by-all learning of protein complexes from mass spectrometry data
Blake Borgeson, Center for Systems and Synthetic Biology, University of Texas at Austin; Cuihong Wa
06:15 PM - 06:30 PM
Bioinformatics - Machine Learning
Detection and characterization of interactions of genetic risk factors in disease
Francis-Lyon, Patricia, University of San Francisco; Belvadi, Shashank, University of San Francisco; Wang, Lin, University of San Francisco
06:30 PM - 06:45 PM
Bioinformatics - Machine Learning
MIST: Micro-Simulation Tool to Support Disease Modeling
Jacob Barhak
06:45 PM - 07:00 PM
Bioinformatics - Machine Learning
Discussion
05:00 PM - 05:20 PM
Astronomy and Astrophysics
Python and the SKA
Simon Ratcliffe SKA South Africa, Ludwig Schwardt SKA South Africa
05:20 PM - 05:40 PM
Astronomy and Astrophysics
Combining C++ and Python in the LSST Software Stack
Bosch, Jim, Princeton University
05:40 PM - 06:00 PM
Astronomy and Astrophysics
Ginga: an open-source astronomical image viewer and toolkit
Jeschke, Eric, Subaru Telescope, National Astronomical Observatory of Japan
06:00 PM - 06:20 PM
Astronomy and Astrophysics
Astropy, growing a community-based software system for astronomy
Droettboom, Michael, STScI; Robitaille, Thomas, Max Planck Institute; Tollerud, Erik, Yale Universit
06:20 PM - 06:40 PM
Astronomy and Astrophysics
SunPy - Python for Solar Physicists
Mumford, Stuart, University of Sheffield / SunPy
06:40 PM - 07:00 PM
Astronomy and Astrophysics
Accessing the Virtual Observatory from Python
Plante, Raymond, NCSA/UofIL; Fitzpatrick, Mike, NOAO; Graham, Matthew, Caltech; Tody, Doug, NRAO
05:00 PM - 05:15 PM
GIS - Geospatial Data Analysis
LarvaMap - A python powered larval transport modeling system
Wilcox, Kyle, Applied Science Associates (ASA); Crosby, Alex, Applied Science Associates (ASA)
05:15 PM - 05:30 PM
GIS - Geospatial Data Analysis
SCI-WMS: A Python Based Web Map Service For Met-Ocean Data Accessible Over OpenDAP Or As NetCDF
Crosby, Alexander
05:30 PM - 05:45 PM
GIS - Geospatial Data Analysis
Optimizing Geographic Processing and Analysis for Big Data
Carissa, GeoDecisions; Gleason, Jason, GeoDecisions
05:45 PM - 06:00 PM
GIS - Geospatial Data Analysis
The Production of a Multi-Resolution Global Index for Geographic Information Systems
MacManus, Kytt, Columbia University CIESIN
06:00 PM - 06:15 PM
GIS - Geospatial Data Analysis
Streamed Clustering of Lightning Mapping Data in Python Using sklearn
Bruning, Eric C., Texas Tech University
06:15 PM - 07:00 PM
GIS - Geospatial Data Analysis
GIS Panel
Panel participants: Sergio Ray (Arizona State U), Shaun Walbridge (ESRI), Andrew Wilson (TWDB)


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Mini-Symposia, Day 2 - Thurs., June 27th

Note: start times are not always con-current across tracks.

Medical Imaging
Rm 204
Bioinformatics
Rm 203
Meteorology, Climatology, Atmospheric and Oceanic Science
Rm 106
05:00 PM - 05:20 PM
Medical Imaging
NeuroTrends: Large-scale automated analysis of the neuroimaging literature
Carp, Joshua, University of Michigan
05:20 PM - 05:40 PM
Medical Imaging
Estimating and Visualizing the Inertia of the Human Body with Python
Moore, Jason, University of California at Davis; Dembia, Christopher, Stanford
05:40 PM - 06:00 PM
Medical Imaging
An Open Source System for De-identification and Use of Medical Images for Research
Miller, Jeffrey, Center for Biomedical Informatics, The Children's Hospital of Philadelphia
06:00 PM - 06:20 PM
Medical Imaging
Automating Quantitative Confocal Microscopy Analysis
Fenner, Mark; Fenner, Barbara, King's College, Wilkes-Barre, PA
06:20 PM - 06:40 PM
Medical Imaging
Experiences in Python for Medical Image Analysis
Warner, Joshua, Mayo Clinic Department of Biomedical Engineering
06:40 PM - 07:00 PM
Medical Imaging
A Rapidly-Adaptable Analytical Imaging & Measurement Standardization Platform for Cancer Diagnostics Research
Garsha, Karl, Ventana Medical Systems Inc.; Ventura, Franklin, Ventana Medical Systems Inc.;
05:00 PM - 05:20 PM
Bioinformatics - Frameworks
EMAN2 and EMEN2: Flexible Python-based platforms for electron microscopy
Rees, Ian, Baylor College of Medicine; Ludtke, Steven, Baylor College of Medicine
05:20 PM - 05:40 PM
Bioinformatics - Frameworks
Massive Online Collaborative Research and Modeling using Synapse and Python
Omberg, Larsson, Sage Bionetworks
05:40 PM - 06:00 PM
Bioinformatics - Frameworks
Discussion
05:00 PM - 05:20 PM
Meteorology, Climatology, Atmospheric and Oceanic Science
Iris & Cartopy: Open source Python packages for Atmospheric and Oceanographic science
Elson, Philip, UK Met Office;
05:20 PM - 05:40 PM
Meteorology, Climatology, Atmospheric and Oceanic Science
Advances in delivery and access tools for coastal ocean model data
Signell, Richard, US Geological Survey
05:40 PM - 06:00 PM
Meteorology, Climatology, Atmospheric and Oceanic Science
Using Python to drive the General NOAA Operational Modeling Environment
Barker, Christopher H. NOAA Emergency Response Division.
06:00 PM - 06:20 PM
Meteorology, Climatology, Atmospheric and Oceanic Science
Oil spill modeling and uncertainty forecasts with Python
Hou,Xianlong, University of Texas at Austin; Hodges,Ben, University of Texas at Austin
06:20 PM - 06:40 PM
Meteorology, Climatology, Atmospheric and Oceanic Science
Climate Observations from ACIS in pandas
Noon, William: Northeast Regional Climate Center

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